dtrackr - Track your Data Pipelines

Track and document 'dplyr' data pipelines. As you filter, mutate, and join your way through a data set, 'dtrackr' seamlessly keeps track of your data flow and makes publication ready documentation of a data pipeline simple.

Last updated 4 months ago

8.78 score 69 stars 1 dependents 362 scripts 294 downloads

ggoutbreak - Estimate Incidence, Proportions and Exponential Growth Rates

Simple statistical models and visualisations for calculating the incidence, proportion, exponential growth rate, and reproduction number of infectious disease case time series. This toolkit was largely developed during the COVID-19 pandemic.

Last updated 12 days ago

4.30 score 1 stars

testRapi - A Test Library

Documents the features of the 'r6-generator-maven-plugin' by providing an example of an R package automatically generated from Java code by the plugin. It is not intended to be useful beyond testing, demonstrating and documenting the features of the r6 generator plugin.

Last updated 9 months ago

openjdk

3.70 score 1 scripts

roogledocs - R Wrapper For Googledocs Java Library

Programmatically substitute images, data and tables into a google doc or presentation. R library to perform limited interactions with google docs and slides in R via the Java API library. The purpose being to support google docs as a platform for interactive development and documentation of data analysis in R for scientific publication, although it is not limited to this purpose. The workflow supported is a parallel documentation and analysis where a team of people are working collaboratively on documentation, whilst at the same time analysis is being performed and results updated repeatedly as a result of new data. In this environment updating numeric results, tabular data and figures in word documents manually becomes annoying. With roogledocs you can automate this a bit like a RMarkdown document, but with the added benefit that the content can be updated independently of the analysis, by the wider team.

Last updated 10 months ago

openjdk

3.65 score 3 stars 1 scripts

pkgutils - Functions for building functions

A suite of tools for helping in function and package development. This includes functions that check variables for consistency, or help parse out inputs to functions. This has a particular focus on inputs that use formula or `tidyselect` interfaces to define the parts of a dataframe that we might be interested in.

Last updated 11 months ago

3.52 score 2 stars 1 dependents 11 scripts 59 downloads

testerror - Uncertainty in Multiplex Panel Testing

Provides methods to support the estimation of epidemiological parameters based on the results of multiplex panel tests.

Last updated 11 months ago

3.40 score 1 stars 4 scripts

huxtableone - Descriptive Tables for Observational or Interventional Studies

Generating tabular summaries of data in a format suitable for reporting in journal articles is fiddly and slows down more detailed analysis. Comparing two populations with respect to an intervention, and reporting it is a task that can be largely automated.

Last updated 15 days ago

3.30 score

arear - Geospatial Convenience Functions and a Supply Demand Catchment Area Generator

Geospatial function collection from the COVID-19 pandemic. The main focus of this was integrating geospatial demographic, hospital capacity and COVID data from England, Scotland, Wales and Northern Ireland, all of which were available on different sites and methods. The UK has a wide range of administrative geographic boundaries for different purposes and moving from different scales and resolutions proved necessary. As the geospatial operations are quite time consuming but don't need to be repeated the ability to cache results of geospatial transformations is useful and embedded into these functions.

Last updated 10 months ago

3.30 score 4 stars 4 scripts

rmaven - Run Java Build Tool Maven from R

Distributing large files in packages is contrary to 'CRAN' policies. Java libraries frequently have large dependencies, and this makes them hard to submit to CRAN. Java has a sophisticated dependency management tool (Maven) which can calculate and cache dependencies. Running Maven from R allows for better integration of Java libraries into R. Maven provides various options for resolving complied Java code dependencies, configuring class path, or compiling Java source code, all of which are useful for efficient use of Java within R.

Last updated 10 months ago

3.00 score 2 scripts

html2pdfr - R Wrapper For Openhtmltopdf Java Library

HTML and CSS do a good job at automatically laying out and styling content particularly in tables, however it is not natively designed for pagination. This library converts HTML content into PDF and PNG formats for embedding into LaTeX documents, within the constraints of page sizes. It allows use of HTML table layout from HTML first libraries such as 'gt' and 'huxtable' within latex documents. It allows HTML content to grow in width up to the page dimensions, but preventing it from overflowing, and without forcing table layout to be wider than it would normally be. This heurisitic calculation of the output size up to fit within set limits is one of the differentiators between this and other HTML to PDF converters. Although the focus is on tables, any basic HTML content can be rendered, including simple SVG and MathML, up to the support of the underlying HTML rendering engine (https://github.com/danfickle/openhtmltopdf).

Last updated 10 months ago

openjdk

2.70 score 1 stars 2 scripts

jplantuml4r - Jplantuml4r: R6 Java Wrapper Package

An R6 package wrapping java code in the org.github.io.github.terminological:jplantuml4r library. This library was generated by the r6-generator-maven-plugin.

Last updated 10 months ago

openjdk

2.70 score 1 stars 3 scripts

rsurvstat - Download Timeseries from SurvStat (Robert Koch Institute)

What the package does (one paragraph).

Last updated 2 years ago

2.70 score

avoncap - AvonCap Study Analysis

A WIP set of functions allowing data load, wrangling of the AvonCap data set.

Last updated 3 months ago

2.34 score 11 scripts

modelfitter - Bootstrapping models and model fits

This is a very early work in progress.

Last updated 10 months ago

2.00 score 1 stars

pkgtools - Code generation and linting functions for R packages

Perform common tasks and fix common errors in project and package development. This is a developer tool rather than an end user package.

Last updated 12 months ago

1.70 score 1 stars